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This weeks top spatial transcriptomics paper 🧬 Week 29
CCR7+ dendritic cells drive tertiary lymphoid structure formation in tumors, linking spatial organization to improved cancer immunotherapy responses.
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Evo2 and DNA LLMs: Perplexity, Prompting, Genomic Design
Evo2 introduces genomic language models and examines perplexity, DNA prompting, and responsible design—framing safe, exploratory genomics.
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SpliceVarDB: Validated splicing variants for splice-site
SpliceVarDB consolidates thousands of experimentally validated splicing variants across 8,000+ genes, enabling faster diagnostics and model benchmarking.
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This week’s top spatial transcriptomics papers 🧬 Week 25
Spatial transcriptomics unveils conserved brain architecture, neuron diversity, and tumor microenvironment interactions, linking genes to function.
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Cluster TCRs from 10x with TCRdist
Cluster TCRs from 10x data using TCRdist to group related receptors by similarity, turning exact clonotypes into biologically meaningful clusters.
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Autonomous Experimentation Loops: Robots, Analytics
Autonomous Experimentation means designing, running, and interpreting experiments in a continuous loop, linking Robotics, Analytics, and Decision Engines.
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OCR and Digitization for Paper Entry in the Digital Lab
OCR and Digitization turn paper entry forms into usable data, reducing manual entry and speeding up lab registration.
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Job Opening – Student Job Agentic AI
Working student in Data Science / AI to support the development of AI agent systems for life science applications. The role…
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Scanpy scRNA-seq Normalization
In Scanpy, normalize scRNA-seq data to make cells comparable, improving HVG selection, PCA, clustering, and marker detection.
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Immuno Receptor Sequencing: TCR/BCR Basics & NGS Methods
Explore AIRR-seq and how TCR/BCR profiling with NGS informs drug discovery, immuno-oncology, and vaccine development.